基于SSR标记的小酸浆种质资源遗传多样性分析
时间:2021-10-19 21:29 来源:毕业论文 作者:毕业论文 点击:次
摘要小酸浆(Physalis minima),是一年生茄科(Solanaceae)酸浆属(Physalis)草本植物,具有很高的药用价值。目前,对于小酸浆种质资源的多样性仍缺乏科学规范的研究体系,致使小酸浆种间尚存在混杂。为完善小酸浆种质资源的遗传多样性数据库,本实验通过 SSR分子标记技术对来自唐山、丽水、东明、菏泽、六安、平顶山这6个中国不同地区的82个小酸浆品种进行品种遗传多样性的研究。主要研究方法和结果如下:73041 1、82个小酸浆样品基因组DNA的提取:取小酸浆鲜叶为原料,利用EZUP柱式植物基因组DNA抽提试剂盒提取小酸浆基因组DNA,并且通过1。5%的琼脂糖凝胶电泳检测其纯度,检测结果证明提取的DNA可用于进行后续实验。 2、小酸浆DNA的SSR-PCR反应体系(10μL):DNA模板10ng,1μl,5×MIX5μl,正反向引物各0。25mol/L,0。5μl。SSR-PCR扩增程序:94 ℃,5 min预变性;<94 ℃,40 s变性,根据不同引物相应的Tm退火值(一般为56℃)40 s复性,72 ℃,1 min延伸>统共35个循环;最终72 ℃延伸10 min,4 ℃恒温保存。 3、基于SSR标记对小酸浆进同源分析:利用SSR-PCR的方法筛选出8对SSR标记对来自中国6个地区的82个小酸浆DNA进行同源性分析,总共扩出61条SSR条带,其中多态性条带有49条(占80。33%)。平均每个引物产生6。13条多态性条带。证明了SSR引物具有良好的多态性,适合于小酸浆的遗传多样性研究。 4、基于SSR标记数据的UPGMA聚类结果显示,小酸浆种质间的遗传相似系数为0。559~0。989,另外通过主坐标分析和UPGMA聚类发现, SSR标记将82份小酸浆种质资源聚类为I、II两大类,I类包括21份来自唐山的种质,II类又分为3个亚类,分别是II-1丽水、东明的28个种质,II-2菏泽的11个种质以及II-3六安、平顶山的21个种质。 毕业论文关键词:SSR标记; 小酸浆; PCR;遗传多样性;聚类分析;主坐标分析(PcoA) Abstract Physalis minima a species of Solanaceae annual herb, has a very high medicinal value。 Currently,the study of Genetic persity is still lack of Scientific and standardized Research system , which results in Physalis minima’s Interspecific hybrid 。 In order to improve the genetic persity database of germplasm resources ,the genetic persity of 82 samples from 6 different areas (Tangshan,Lishui,Dongming,Heze,Liuan, Pingdinshan) was studied based on SSR markers 。 The main contents and results of this experiment are as follows : 1、82 Physalis minima samples’ genome DNA : The genomic DNA was isolated using the Modified Ezup pillar Plant Genomic DNA Extraction kit with fresh, young Physalis minima leaves。 2、The SSR-PCR reaction system of Physalis minima genomic DNA(10μL):DNA template 10ng,1μl,5×MIX5μl,the forward /reverse primer 0。25mol/L,0。5μl。 SSR-PCR Amplification program 94ºC for 5 min, followed by 35 cycles of 94ºC for 40s, 50ºC (Primer Tm depends) for 40s, 72ºC for 1 min, and a final extension at 72ºC for 10 min。 3、The homology analysis of Physalis minima based on SSR mark: Use 8 pairs of SSR mark to homology analysis 82 samples from 6 different areas of China。 produced 61 reliable loci among 82 populations of Physalis minima , there are about 49 polymorphism bands (accounts 80。33%), each primer produced 6。13 reliable loci。 This result proved the SSR molecular markers are good in polymorphism , and can be used to studying Physalis minima genetic polymorphisms。 4、UPGMA cluster analysis based on SSR molecular markers data, showed that the range of genetic similarities was 0。559~0。989。 The partition of clusters based on SSR molecular markers clustered 82 Physalis minima germplasms into 2 main groups in the UPGMA dendrogram and PCoA plot。 Group I have 22 germplasms from TS。 Cluster II comprised 3 subgenera , they are II-1 include 28 germplasms from LS and DM,II-2 include 11 germplasms of HZ ,II-3 include 21 germplasms from LA and PDS。 (责任编辑:qin) |